rs189037 chr11:108223106 G>A
- Sequence
taacggagaaaagaagccgtggcc[G/A]cgggaggaggcgagaggagtcggg
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) neutrophils
- ASB for transcription factors
- HDAC1_HUMAN E4F1_HUMAN TAF9B_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC1_HUMAN | -1.14 | 1.69 | 2.00 | n/a | n/a | |||
| E4F1_HUMAN | -1.00 | 1.70 | 1.67 | n/a | n/a | |||
| TAF9B_HUMAN | n/a | 2.34 | 2.00 | n/a | n/a | |||
| SP1_HUMAN | -0.32 | 1.36 | 1.44 | -1.08 | Weak Discordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood