rs1891019 chr1:161721643 C>T
- Sequence
gatttccaagggatcaaggtgccc[C/T]ggttctaaacaaccacaggtaagg
- ASB in cell types
- breast tumor tissue
- ASB for transcription factors
- ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | n/a | 2.64 | 2.50 | 1.32 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP chronic kidney disease, hypertension (early onset hypertension), irritible bowel syndrome, ldl cholesterol change with statins, neuroblastoma (brain cancer), parkinsons disease, primary rhegmatogenous retinal detachment, tetrology of fallot
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Lung, Ovary, Pituitary, Whole_Blood