rs1892915 chr21:36989963 T>C
- Sequence
gggccgcgaggtccctatggctgc[T/C]ccaccggaagccccgcccccttct
- ASB in cell types
- HEK293 (embryonic kidney) breast tumor tissue HepG2 (hepatoblastoma) H1 (embryonic stem cells)
- ASB for transcription factors
- ESR1_HUMAN CTCF_HUMAN BC11B_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 0.17 | 2.90 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.76 | 0.67 | 1.33 | n/a | No Hit | |||
| BC11B_HUMAN | -1.14 | 1.65 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood