rs1894593 chr20:42382505 C>A
- Sequence
aggtgttcatggacaagacagagc[C/A]gtcctggaactgagacataaggga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) MCF-7 C4-12 (invasive breast ductal carcinoma)
- ASB for transcription factors
- ZFX_HUMAN NFIB_HUMAN ZN574_HUMAN P53_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | -1.82 | 2.03 | 1.50 | n/a | No Hit | |||
| NFIB_HUMAN | -2.83 | 2.24 | 1.50 | n/a | n/a | |||
| ZN574_HUMAN | -2.23 | 2.15 | 1.33 | n/a | n/a | |||
| P53_HUMAN | -2.61 | 2.35 | 1.50 | 2.21 | Concordant | |||
| ELF1_HUMAN | -2.50 | 2.00 | 1.50 | n/a | No Hit |
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Motif analysis
