rs1894694 chr1:169546143 T>C
- Sequence
taacaccttccattagtcctactc[T/C]ctcacccttttcctcaccacgcag
- ASB in cell types
- HepG2 (hepatoblastoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- TBX3_HUMAN ATF7_HUMAN CTCF_HUMAN FOXA2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| TBX3_HUMAN | 2.56 | -1.62 | 1.33 | -1.74 | Weak Concordant | |||
| ATF7_HUMAN | 2.12 | -1.92 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | -0.22 | 0.83 | 1.19 | n/a | No Hit | |||
| FOXA2_HUMAN | 3.94 | 0.33 | 3.67 | n/a | No Hit |
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Motif analysis
