rs189576 chr18:35497696 A>G
- Sequence
tcccgtttcgcgacgcgcacgcgc[A/G]gcctgggagcgcgactgcgtacct
- ASB in cell types
- K562 (myelogenous leukemia) keratinocytes
- ASB for transcription factors
- NRF1_HUMAN TAF9B_HUMAN SNAI2_HUMAN ERR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| NRF1_HUMAN | 1.11 | 0.11 | 1.67 | -2.99 | Concordant | |||
| TAF9B_HUMAN | n/a | 2.53 | 2.00 | n/a | n/a | |||
| SNAI2_HUMAN | 1.78 | n/a | 1.50 | n/a | No Hit | |||
| ERR1_HUMAN | -3.09 | 2.26 | 2.00 | n/a | No Hit | |||
| TAF7_HUMAN | n/a | 2.40 | 2.50 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Whole_Blood