rs189899 chr17:46923163 G>C
- Sequence
aggacgtgttccgaggaagccaga[G/C]ccggagccgtggcctgcggggccg
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) SK-N-SH (neuroblastoma) liver
- ASB for transcription factors
- ZFX_HUMAN ZBT11_HUMAN GABPA_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | n/a | 2.12 | 2.50 | n/a | No Hit | |||
| ZBT11_HUMAN | n/a | 0.45 | 2.00 | n/a | n/a | |||
| GABPA_HUMAN | 1.70 | 0.02 | 1.67 | n/a | No Hit | |||
| CTCF_HUMAN | 0.42 | 0.66 | 1.25 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP college completion, cystatin c in serum, hdl cholesterol, ldl cholesterol, parkinsons disease, systolic blood pressure (sbp), total cholesterol, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Liver, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood