rs189970436 chr11:728333 T>G
- Sequence
tccggggacacagtcctggggtct[T/G]ggcctgggcaggggcgactgtggg
- ASB in cell types
- K562 (myelogenous leukemia) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN REST_HUMAN KDM1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.90 | -0.03 | 1.68 | n/a | No Hit | |||
| REST_HUMAN | 2.42 | n/a | 2.00 | 3.12 | Discordant | |||
| KDM1A_HUMAN | 1.63 | -1.10 | 2.00 | n/a | n/a |
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Motif analysis
