rs1906342 chr17:45226241 A>G
- Sequence
cctctcctggagggtggggcagcg[A/G]tggtgctaacggtagcagtgtgca
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) Jurkat (T-cells)
- ASB for transcription factors
- SOX6_HUMAN REST_HUMAN TF65_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SOX6_HUMAN | 2.44 | -3.84 | 2.00 | n/a | n/a | |||
| REST_HUMAN | 2.26 | n/a | 2.00 | n/a | No Hit | |||
| TF65_HUMAN | 1.45 | 0.80 | 1.88 | n/a | No Hit | |||
| CTCF_HUMAN | -0.26 | 1.20 | 1.25 | n/a | No Hit | |||
| KDM1A_HUMAN | 1.92 | -2.26 | 2.00 | n/a | n/a |
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