rs190962 chr1:54488371 T>G
- Sequence
ccagcgcccgagcggagcgcgcgg[T/G]gggggtgggggcgcgcggcgcggg
- ASB in cell types
- HepG2 (hepatoblastoma) neural cell breast tumor tissue SK-N-SH (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN MAX_HUMAN RAD21_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.90 | 0.44 | 1.20 | n/a | No Hit | |||
| MAX_HUMAN | 0.94 | -0.21 | 1.37 | n/a | No Hit | |||
| RAD21_HUMAN | 0.76 | -0.01 | 1.46 | n/a | n/a | |||
| ESR1_HUMAN | n/a | 2.57 | 2.50 | n/a | No Hit | |||
| SOX13_HUMAN | 1.63 | -1.65 | 1.33 | n/a | n/a |
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