rs192228 chr16:3457949 G>T
- Sequence
cgctcccaacatggcggcagcgcc[G/T]gcctcagggggcggggccacgtgg
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) HEK293T (embryonic kidney) foreskin keratinocyte
- ASB for transcription factors
- LMBL2_HUMAN STAT1_HUMAN TYY1_HUMAN MAX_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| LMBL2_HUMAN | n/a | 1.66 | 2.00 | n/a | n/a | |||
| STAT1_HUMAN | 2.30 | 0.43 | 2.11 | n/a | No Hit | |||
| TYY1_HUMAN | 1.42 | -0.10 | 1.35 | n/a | No Hit | |||
| MAX_HUMAN | 0.36 | 1.58 | 1.40 | n/a | No Hit | |||
| CTCF_HUMAN | 0.77 | 0.37 | 1.46 | -2.05 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood