rs1933107 chr1:168555657 A>G
- Sequence
tgagtttcagaatgtgccctcttg[A/G]tcctctttgttttgttttcatttt
- ASB in cell types
- LNCaP C4-2 (prostate carcinoma) VCaP (prostate carcinoma) liver
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN HNF4A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.14 | -0.01 | 1.59 | -1.69 | Weak Concordant | |||
| FOXA1_HUMAN | 1.21 | -1.23 | 1.75 | n/a | No Hit | |||
| HNF4A_HUMAN | 1.67 | -1.30 | 1.33 | n/a | No Hit |
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Motif analysis
