rs193536 chr16:14300987 C>T
- Sequence
aagttgggtggtgtgttttatgag[C/T]gtgacctgtgttggccaacagagg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) erythroid cells epidermal keratinocytes
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN FOXK2_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.69 | 1.01 | 1.42 | -0.16 | Weak Discordant | |||
| RAD21_HUMAN | -0.10 | 0.90 | 1.35 | n/a | n/a | |||
| FOXK2_HUMAN | 2.19 | 0.59 | 1.88 | n/a | n/a | |||
| HDAC1_HUMAN | -0.63 | 1.73 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | -0.16 | 1.71 | 2.00 | n/a | n/a |
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Motif analysis
