rs193778 chr16:11257354 A>G
- Sequence
gcctggctgctccgtgtatttttg[A/G]atgaaggcatgtgaggagccccag
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) A549 (lung carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- RAD21_HUMAN SMC3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RAD21_HUMAN | -0.33 | 0.95 | 2.15 | n/a | n/a | |||
| SMC3_HUMAN | -0.30 | 0.82 | 1.86 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP nicotine dependence (smoking), smoking cessation in a trial of precessation nicotine replacement
GTEx eQTL Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid