rs194563 chr16:21566112 A>G
- Sequence
caccttgcacccattgttggccta[A/G]ttctgctgtctcgtctatcttgtg
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia) LNCaP (prostate carcinoma) breast tumor tissue
- ASB for transcription factors
- GATA3_HUMAN FOXA1_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GATA3_HUMAN | -3.20 | 1.91 | 1.75 | n/a | No Hit | |||
| FOXA1_HUMAN | -0.64 | 1.06 | 1.54 | 0.78 | Weak Concordant | |||
| ESR1_HUMAN | -3.80 | 2.20 | 2.50 | n/a | No Hit |
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Motif analysis
