rs194749 chr14:68807188 T>C
- Sequence
gagatcagacagctcttggagggt[T/C]gccatgtggacagccggcggggga
- ASB in cell types
- GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- RFX1_HUMAN IKZF1_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | 2.05 | -1.81 | 1.50 | -1.92 | Weak Concordant | |||
| IKZF1_HUMAN | 1.31 | -1.04 | 1.33 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.77 | -1.42 | 1.33 | n/a | n/a |
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Motif analysis
