rs1956345 chr14:67837208 G>A
- Sequence
catcctcttcttttggaatatact[G/A]ccaccaggtggtgccagaatcaca
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) MCF7 (Invasive ductal breast carcinoma) HeLa S3 (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN FOXA1_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.76 | 1.00 | 1.56 | -1.28 | Weak Concordant | |||
| RAD21_HUMAN | 0.17 | 1.18 | 1.83 | n/a | n/a | |||
| FOXA1_HUMAN | -0.10 | 0.73 | 1.46 | n/a | No Hit | |||
| SMC3_HUMAN | -0.14 | 1.16 | 1.99 | n/a | n/a |
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Motif analysis
