rs1965999 chr1:40374624 T>A
- Sequence
tgtgtgtgtgtgtgtgtgtgtgtg[T/A]gagagagagagagagagaatgacg
- ASB in cell types
- GM12878 (female B-cells) neural cell MCF7 (Invasive ductal breast carcinoma) pancreas
- ASB for transcription factors
- EP300_HUMAN ELF1_HUMAN TADBP_HUMAN ATF7_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | -2.68 | 2.63 | 1.00 | n/a | n/a | |||
| ELF1_HUMAN | -1.91 | 1.69 | 1.33 | n/a | No Hit | |||
| TADBP_HUMAN | -2.18 | 1.99 | 1.33 | n/a | n/a | |||
| ATF7_HUMAN | -1.84 | 1.64 | 1.33 | n/a | n/a | |||
| MXI1_HUMAN | -1.45 | 1.67 | 1.00 | n/a | No Hit |
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