rs1969154 chr3:12787657 A>G
- Sequence
cagctccaggtgcagcaggatccc[A/G]ctgagctgctctatctgcagggtg
- ASB in cell types
- LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma) adrenal gland HEK293 (embryonic kidney)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.23 | 1.81 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, height, ldl cholesterol, total cholesterol, triglycerides
GTEx eQTL Artery_Tibial, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid