rs197374 chr1:111747361 C>T
- Sequence
tctttctcaggttatgcatagtga[C/T]caaaccccgcctggtaactgtagg
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) hASC (preadipocytes)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HEK293 (embryonic kidney) | -0.17 | 0.89 | 1.98 | |||
| GM12878 (female B-cells) | -0.73 | 1.59 | 1.33 | |||
| hASC (preadipocytes) | -0.70 | 1.23 | 1.33 |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), college completion, cystatin c in serum, fasting blood glucose, fasting insulin, homa-ir, ldl cholesterol, lp-pla2 activity, lp-pla2 mass, obesity with early age of onset (age >2), total cholesterol, waist hip ratio, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Esophagus_Mucosa, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Thyroid