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rs197376 chr1:111748129 C>T

Sequence
ccttgtaagtgagccatgtgcttg[C/T]aggtgggctgcgctaggctagttg
ASB in cell types
HEK293 (embryonic kidney)
ASB for transcription factors
EGR2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EGR2_HUMAN -2.17 2.25 1.007.6·10-3 2.00 3.37 Concordant
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Motif analysis

EGR2_HUMAN Concordant
EGR2_HUMAN pic

Genetic associations

GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Adrenal_Gland Artery_Aorta Artery_Tibial Brain_Cerebellum Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Nerve_Tibial Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Spleen Stomach Thyroid Whole_Blood

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