rs197392 chr1:111755960 A>G
- Sequence
atttgaagcctcgggagccttagc[A/G]gcagtggcgactgctatgccggct
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells) K562 (myelogenous leukemia) H1 (embryonic stem cells)
- ASB for transcription factors
- IRF5_HUMAN FOXK2_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IRF5_HUMAN | n/a | 2.31 | 1.33 | n/a | n/a | |||
| FOXK2_HUMAN | 0.49 | 2.22 | 1.33 | n/a | n/a | |||
| CTCF_HUMAN | 0.55 | 0.66 | 1.35 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Thyroid, Whole_Blood