rs1974122 chr1:16727269 C>A
- Sequence
tactcttttctcttatcccccagg[C/A]cgtgggtgtgtagaggccttggtg
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) A549 (lung carcinoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- PRDM9_HUMAN SRBP2_HUMAN ZNF34_HUMAN ZN366_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PRDM9_HUMAN | 3.16 | n/a | 2.00 | n/a | n/a | |||
| SRBP2_HUMAN | 2.42 | 3.27 | 2.50 | n/a | No Hit | |||
| ZNF34_HUMAN | 2.56 | n/a | 2.00 | n/a | n/a | |||
| ZN366_HUMAN | 2.58 | n/a | 2.00 | n/a | n/a | |||
| PRDM1_HUMAN | 2.26 | n/a | 2.00 | n/a | No Hit |
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Motif analysis
