rs1974834 chr19:52786845 C>A
- Sequence
ctgggcggggtagaggcggggccc[C/A]aggcggagagaccttgccctttag
- ASB in cell types
- keratinocytes foreskin keratinocyte MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- SNAI2_HUMAN ELF1_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | 2.59 | n/a | 1.50 | n/a | No Hit | |||
| ELF1_HUMAN | 3.28 | n/a | 3.00 | n/a | No Hit | |||
| CTCF_HUMAN | 1.10 | n/a | 2.50 | -3.40 | Concordant |
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Motif analysis
