rs1978423 chr19:18339903 T>C
- Sequence
ggtaataggatagcagggaggtga[T/C]agccagagaaggccacaaggagaa
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- MNT_HUMAN ATF2_HUMAN ARI1B_HUMAN NR2C1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 1.71 | -0.58 | 2.00 | n/a | n/a | |||
| ATF2_HUMAN | 2.23 | -3.06 | 2.00 | n/a | No Hit | |||
| ARI1B_HUMAN | 2.36 | n/a | 2.00 | n/a | n/a | |||
| NR2C1_HUMAN | 1.74 | -0.98 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease, irritible bowel syndrome, prop taste detection threshold, relative telomere length, stabilized warfarin dose
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Nerve_Tibial, Pancreas, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid