rs1980277 chr3:160667551 G>A
- Sequence
tctggactctttgaaaaagttcca[G/A]tcttcctggaggataatgtgtcac
- ASB in cell types
- HEK293 (embryonic kidney) HAEC (human aortic endothelial cells)
- ASB for transcription factors
- FOS_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | n/a | 0.47 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (geographic atrophy), ldl cholesterol, total cholesterol
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Putamen_basal_ganglia, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood