rs1982784 chr16:4616536 A>G
- Sequence
gcgcttccggttgacgttgctgac[A/G]gctagtgaggctttagcccgcttc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma) breast tumor tissue cranial neural crest cells
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN ZN143_HUMAN AP2A_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.06 | 0.53 | 1.97 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.32 | 1.49 | 1.85 | n/a | No Hit | |||
| ZN143_HUMAN | 2.27 | -0.29 | 2.00 | n/a | No Hit | |||
| AP2A_HUMAN | 2.10 | -1.68 | 2.00 | n/a | No Hit | |||
| SIN3A_HUMAN | 2.12 | -0.83 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Artery_Tibial, Cells_Cultured_fibroblasts, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis