rs198817 chr6:26126296 A>G
- Sequence
cttcccagatactgacaccggctc[A/G]gggcggatccagccttttccgctc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) LNCaP (prostate carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- REST_HUMAN FOXK2_HUMAN SMAD5_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| REST_HUMAN | 0.91 | -0.39 | 2.17 | n/a | No Hit | |||
| FOXK2_HUMAN | 2.21 | 1.24 | 2.33 | n/a | n/a | |||
| SMAD5_HUMAN | 2.61 | n/a | 3.00 | n/a | n/a | |||
| FOXA1_HUMAN | 0.98 | 0.57 | 1.92 | n/a | No Hit | |||
| ZN316_HUMAN | 2.52 | n/a | 3.00 | n/a | n/a |
Items per page:
1 – 5 of 9
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood