rs198819 chr6:26124202 C>T
- Sequence
gtttgttttctcgtgagcttaggc[C/T]gctggttttggtgatttttgtctg
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) GM12878 (female B-cells) Th2-cells
- ASB for transcription factors
- FOXK2_HUMAN MAF_HUMAN E4F1_HUMAN CREB1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.47 | 1.68 | 2.13 | n/a | n/a | |||
| MAF_HUMAN | n/a | 2.71 | 2.50 | n/a | No Hit | |||
| E4F1_HUMAN | 2.05 | n/a | 2.17 | n/a | n/a | |||
| CREB1_HUMAN | -1.04 | 1.37 | 2.00 | n/a | No Hit | |||
| SMAD5_HUMAN | 2.77 | n/a | 3.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood