rs198852 chr6:26104220 A>G
- Sequence
agccatggatgtagtatatgccct[A/G]aaacgtcaggggcgcactctgtat
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) foreskin keratinocyte GM12878 (female B-cells)
- ASB for transcription factors
- FOXK2_HUMAN AFF1_HUMAN MAF_HUMAN BCLF1_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 1.81 | -0.53 | 2.33 | n/a | n/a | |||
| AFF1_HUMAN | 2.48 | n/a | 3.00 | n/a | n/a | |||
| MAF_HUMAN | -3.38 | 1.66 | 2.50 | n/a | No Hit | |||
| BCLF1_HUMAN | 1.95 | -1.05 | 2.83 | n/a | n/a | |||
| ETV1_HUMAN | 2.69 | n/a | 3.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood