rs198854 chr6:26103829 T>C
- Sequence
acagtttttcttgctccacccact[T/C]ggtgaccaaatttgaaaaaaaaaa
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) cranial neural crest cells neural cell
- ASB for transcription factors
- AP2A_HUMAN TAL1_HUMAN FOXA2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AP2A_HUMAN | -1.79 | 2.01 | 2.00 | n/a | No Hit | |||
| TAL1_HUMAN | 2.10 | n/a | 3.00 | n/a | No Hit | |||
| FOXA2_HUMAN | -1.66 | 1.87 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP comorbid depressive syndrome and alcohol dependence, coronary artery disease (cad), diastolic blood pressure (dbp), height, serum urate, systolic blood pressure (sbp), triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Vagina, Whole_Blood