rs198952 chr5:115430538 T>C
- Sequence
gcaccatcaagtttacccaggatg[T/C]ttaccatcagttactcatcacagt
- ASB in cell types
- LHSAR (prostate epithelial cells) MDA-MB-453 (breast adenocarcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.27 | -0.07 | 1.44 | n/a | No Hit | |||
| FOXA1_HUMAN | 2.17 | -2.07 | 1.33 | n/a | No Hit |
Items per page:
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellum, Cells_Cultured_fibroblasts, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis