rs1997502 chr2:102227789 A>G
- Sequence
attcttcctggaagctcaggcccc[A/G]tggtgtgtctctctcactgtctct
- ASB in cell types
- HepG2 (hepatoblastoma) HEK293 (embryonic kidney) upper lobe of left lung
- ASB for transcription factors
- FOXA2_HUMAN GLIS1_HUMAN TF65_HUMAN ZEB2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | 2.14 | -1.97 | 2.00 | n/a | No Hit | |||
| GLIS1_HUMAN | 1.86 | -2.14 | 1.50 | n/a | n/a | |||
| TF65_HUMAN | -0.21 | 2.42 | 1.83 | n/a | No Hit | |||
| ZEB2_HUMAN | 1.79 | -1.52 | 1.00 | n/a | n/a | |||
| EP300_HUMAN | 2.01 | 0.41 | 1.54 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Esophagus_Mucosa, Muscle_Skeletal, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood