rs1997606 chr21:28885238 C>G
- Sequence
tgccagttcggcagccgctgcctc[C/G]agcgcgtccaaaagcagaaacgtg
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) CD14+ monocytes breast tumor tissue
- ASB for transcription factors
- STAT1_HUMAN HTF4_HUMAN FOXK2_HUMAN ESR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | -1.79 | 2.01 | 2.00 | n/a | No Hit | |||
| HTF4_HUMAN | -2.08 | 2.00 | 1.33 | n/a | No Hit | |||
| FOXK2_HUMAN | -1.65 | 1.98 | 1.33 | n/a | n/a | |||
| ESR1_HUMAN | -0.07 | 2.35 | 2.25 | n/a | No Hit |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
EMBL-EBI estimated glomerular filtration rate after 1 year in renal transplantation (recipient effect)
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood