rs2003421 chr1:16644289 G>T
- Sequence
tagttgaagatctgattaaatgca[G/T]tcattcatttgatgagcagacctt
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- KDM5A_HUMAN CEBPB_HUMAN IKZF2_HUMAN Z354B_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM5A_HUMAN | 2.30 | -2.54 | 1.33 | n/a | n/a | |||
| CEBPB_HUMAN | 2.24 | n/a | 1.33 | n/a | No Hit | |||
| IKZF2_HUMAN | 2.28 | n/a | 2.50 | n/a | n/a | |||
| Z354B_HUMAN | 2.58 | -3.00 | 1.33 | n/a | n/a | |||
| GABP1_HUMAN | 2.13 | n/a | 2.17 | n/a | n/a |
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Motif analysis
