rs2004527 chr20:62923396 T>C
- Sequence
tcaccatattggccaggctggtct[T/C]gaactcctgacaagtgatccaccc
- ASB in cell types
- HEK293 (embryonic kidney) GM12878 (female B-cells)
- ASB for transcription factors
- ZN189_HUMAN GLIS1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZN189_HUMAN | n/a | 2.40 | 2.00 | n/a | n/a | |||
| GLIS1_HUMAN | -2.61 | 2.12 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood