rs200498 chr6:27824450 T>C
- Sequence
tcggtggttgagcgtccctttcta[T/C]caataaaaggcccttttcagggcc
- ASB in cell types
- tibial nerve H1 (embryonic stem cells) HepG2 (hepatoblastoma)
- ASB for transcription factors
- EP300_HUMAN CHD1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EP300_HUMAN | 1.96 | -0.62 | 1.17 | n/a | n/a | |||
| CHD1_HUMAN | 1.93 | -2.17 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Testis, Thyroid, Whole_Blood