rs200808278 chr16:12612847 G>C
- Sequence
tcatcgtgagtcaccggttctgta[G/C]cagtcattcctgcttctcagactt
- ASB in cell types
- HepG2 (hepatoblastoma) liver HCT-116 (colon carcinoma) 786-O (renal carcinoma)
- ASB for transcription factors
- FOXA2_HUMAN JUN_HUMAN RXRA_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA2_HUMAN | n/a | 0.58 | 3.00 | n/a | No Hit | |||
| JUN_HUMAN | -0.61 | 1.55 | 1.33 | n/a | No Hit | |||
| RXRA_HUMAN | 1.99 | -1.89 | 1.33 | n/a | No Hit | |||
| FOXA1_HUMAN | n/a | 2.05 | 2.50 | n/a | No Hit | |||
| MNT_HUMAN | -3.15 | 2.00 | 2.50 | n/a | n/a |
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