rs202083 chr13:30307179 C>T
- Sequence
accgcgagcctggcgctcccgcgc[C/T]cctccccgtccccgcacgggagcc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) thymus-derived CD34- cells
- ASB for transcription factors
- RFX1_HUMAN BC11B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RFX1_HUMAN | n/a | 2.36 | 3.00 | n/a | No Hit | |||
| BC11B_HUMAN | 2.02 | -3.95 | 2.50 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Tibial, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Skin_Sun_Exposed_Lower_leg, Thyroid