rs2028548 chr15:78146778 C>T
- Sequence
tgggtcttgttcattttttgttct[C/T]acagtgcacttgctagagaatggc
- ASB in cell types
- HEK293 (embryonic kidney)
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| HEK293 (embryonic kidney) | -0.27 | 0.74 | 1.77 |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, bipolar disorder, chronic kidney disease, height, homa-b, homa-ir, irritible bowel syndrome, ldl cholesterol change with statins, major depressive disorder, paternal transmission distortion, transmission distortion, triglycerides, waist hip ratio, years of education
GTEx eQTL Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Thyroid