rs2029852 chr12:116737461 G>C
- Sequence
aagggaaggaagaaagacggaagg[G/C]aagggagaggaaaaaggggaggaa
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HEK293T (embryonic kidney) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- HTF4_HUMAN BC11A_HUMAN MNT_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HTF4_HUMAN | -1.07 | 1.80 | 2.00 | n/a | No Hit | |||
| BC11A_HUMAN | 2.25 | -1.95 | 2.00 | -3.55 | Concordant | |||
| MNT_HUMAN | -1.01 | 1.29 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, body mass index (bmi), obesity (body mass index (bmi))