rs2033493 chr19:10230178 A>C
- Sequence
ccatggagatggcagcaggacccg[A/C]ccccgtgctggcccgcactctcgg
- ASB in cell types
- HEK293 (embryonic kidney) HepG2 (hepatoblastoma)
- ASB for transcription factors
- EGR2_HUMAN CTCF_HUMAN SP2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR2_HUMAN | n/a | 2.20 | 2.00 | 3.66 | Concordant | |||
| CTCF_HUMAN | -0.57 | 1.22 | 1.58 | -0.86 | Weak Discordant | |||
| SP2_HUMAN | -3.00 | 2.17 | 2.00 | 6.17 | Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Cells_Cultured_fibroblasts, Colon_Sigmoid, Liver, Thyroid, Whole_Blood