rs203877 chr6:28080846 T>C
- Sequence
agacccaggaaggattcttggaat[T/C]gtagtccaaaggcatcccgccttc
- ASB in cell types
- HepG2 (hepatoblastoma) GM12878 (female B-cells) VCaP (prostate carcinoma) LNCaP (prostate carcinoma)
- ASB for transcription factors
- CREB1_HUMAN THA11_HUMAN GABPA_HUMAN ZN143_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 2.02 | -0.35 | 1.68 | n/a | No Hit | |||
| THA11_HUMAN | 3.40 | n/a | 2.00 | -2.93 | Concordant | |||
| GABPA_HUMAN | 1.63 | 0.53 | 1.86 | n/a | No Hit | |||
| ZN143_HUMAN | 1.14 | -1.13 | 1.42 | -3.13 | Concordant | |||
| ATF1_HUMAN | 2.21 | -0.83 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP age at death with kuru exposure, coronary artery disease (cad), lp-pla2 activity, obesity with early age of onset (age >2), rheumatoid arthritis, tetrology of fallot
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood