rs2038966 chr20:53623673 G>A
- Sequence
tataaaagaaaactttgttcttta[G/A]taagtgattttctcccccgacagg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) GM12878 (female B-cells)
- ASB for transcription factors
- KDM1A_HUMAN NFXL1_HUMAN SMCA4_HUMAN SMRC2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| KDM1A_HUMAN | 2.84 | n/a | 2.00 | n/a | n/a | |||
| NFXL1_HUMAN | n/a | 3.01 | 2.00 | n/a | n/a | |||
| SMCA4_HUMAN | 2.53 | n/a | 2.00 | n/a | n/a | |||
| SMRC2_HUMAN | 2.52 | n/a | 2.00 | n/a | n/a | |||
| FOXA1_HUMAN | 1.74 | -1.45 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP 2 hour glucose, diastolic blood pressure (dbp), obesity with early age of onset (age >2), rheumatoid arthritis, total cholesterol change with statins, urinary albumin-to-creatinine ratio