rs2045583 chr1:89553415 A>C
- Sequence
agtgtattcttaagttgatgtttg[A/C]tctcagcatgtttaacctggccca
- ASB in cell types
- LNCaP (prostate carcinoma) HEK293 (embryonic kidney) K562 (myelogenous leukemia)
- ASB for transcription factors
- FOXA1_HUMAN ANDR_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 0.06 | 1.10 | 1.66 | 3.75 | Concordant | |||
| ANDR_HUMAN | -0.51 | 0.94 | 1.44 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), homa-b, homa-ir, ldl cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid, Whole_Blood