rs206787 chr6:32968461 A>T
- Sequence
ggcgcgggctcccgccccacgaaa[A/T]gcgcgcgctccaagccccgccgcc
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) LNCaP (prostate carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- E2F1_HUMAN CTCF_HUMAN FOXK2_HUMAN SNAI2_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| E2F1_HUMAN | 1.44 | -0.34 | 1.78 | n/a | No Hit | |||
| CTCF_HUMAN | 0.20 | 0.77 | 1.41 | n/a | No Hit | |||
| FOXK2_HUMAN | 0.91 | 1.81 | 2.33 | n/a | n/a | |||
| SNAI2_HUMAN | 1.88 | -1.81 | 1.50 | n/a | No Hit | |||
| ETV5_HUMAN | 2.10 | -1.79 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood