ADASTRA v1.6.10
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adastra.autosome.org
rs206990
chr6:167285281
C
>
T
Sequence
gctggcatttgtcacacgtcttcc[C/T]gtgtctaaagtgcagaattcggga
ASB in cell types
liver
ASB for transcription factors
HNF4A_HUMAN
SP1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
T
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
HNF4A_HUMAN
-3.30
2.91
1.00
4.8·10
-7
1.33
n/a
No Hit
SP1_HUMAN
-1.99
2.22
1.00
6.4·10
-3
1.33
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
college completion
,
hypertension (early onset hypertension)
,
irritible bowel syndrome
,
rheumatoid arthritis
GTEx eQTL
Brain_Caudate_basal_ganglia
,
Brain_Hippocampus
,
Brain_Hypothalamus
,
Brain_Nucleus_accumbens_basal_ganglia
,
Brain_Substantia_nigra
,
Esophagus_Mucosa
,
Lung
,
Pituitary
,
Testis
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)