rs2072349 chr19:3435256 T>C
- Sequence
ccggccttccggtctgagtcaccg[T/C]ggcgggaactacgtcttccggcag
- ASB in cell types
- K562 (myelogenous leukemia) GM12878 (female B-cells) HepG2 (hepatoblastoma) CD14+ monocytes
- ASB for transcription factors
- FOXK2_HUMAN STAT1_HUMAN RFX1_HUMAN IKZF2_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXK2_HUMAN | 2.06 | 0.99 | 1.78 | n/a | n/a | |||
| STAT1_HUMAN | 1.74 | n/a | 2.50 | n/a | No Hit | |||
| RFX1_HUMAN | -1.90 | 2.31 | 1.78 | -1.65 | Weak Discordant | |||
| IKZF2_HUMAN | 1.89 | n/a | 1.33 | n/a | n/a | |||
| NR2C1_HUMAN | -2.41 | 2.06 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP adiponectin levels, hdl cholesterol, height, serum creatinine, urinary albumin-to-creatinine ratio