rs2072441 chr17:48107652 C>G
- Sequence
ggggccttggccagcggagccgcg[C/G]tattcggaagcgggaatcccactc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma) foreskin keratinocyte
- ASB for transcription factors
- EGR1_HUMAN FOXK2_HUMAN MNT_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | -0.81 | 2.13 | 2.00 | n/a | No Hit | |||
| FOXK2_HUMAN | -0.86 | 1.21 | 1.71 | n/a | n/a | |||
| MNT_HUMAN | 0.16 | 1.46 | 1.88 | n/a | n/a | |||
| CREB1_HUMAN | -1.06 | 1.59 | 1.50 | n/a | No Hit | |||
| KDM1A_HUMAN | -0.62 | 2.07 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood