rs2072814 chr22:32474782 C>T
- Sequence
gcctccagctctcggggtcggctc[C/T]aggaggcgccctcaggagaggggc
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) 22RV1 (prostate carcinoma) epithelial cell of prostate SK-N-SH (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN BC11B_HUMAN CTCFL_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.27 | 1.40 | 1.45 | -0.98 | Weak Discordant | |||
| BC11B_HUMAN | 1.74 | -1.15 | 2.00 | n/a | n/a | |||
| CTCFL_HUMAN | -1.37 | 1.83 | 2.00 | -1.05 | Weak Discordant |
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Motif analysis
